Publications

Cicek, V., Babaoglu, M., Saylik, F., Yavuz, S., Mazlum, A. F., Genc, M. S., Altinisik, H., Oguz, M., Korucu, B. C., Hayiroglu, M. I., Cinar, T., & Bagci, U.

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2025RSNA 2025

A predictive MRI radiomics model for improved soft tissue sarcoma subtype differentiation

Laetitia Perronne, MD, MSc, Nicolo Gennaro, MD, Mirinae Seo, MD, Zuzanna Kobus, MD, Linkai Peng, BEng, Gorkem Durak, MD, Ulas Bagci, MSc, PhD, Amir Borhani, MD, Hatice Savas, MD, Linda C. Kelahan, MD, Kamal Subedi, MD, Ryan J. Avery, MD, Tugce Agirlar Trabzonlu, MD, Chase S. Krumpelman, MD, PhD, Seth Pollack, MD, Pedro Hermida De Viveiros, Yuri Velichko, PhD

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2025IEEE ICECCME 2025

A reverse mamba attention network for pathological liver segmentation

Jun Zeng, Debesh Jha, Ertugrul Aktas, Elif Keles, Alpay Medetalibeyoglu, Matthew Antalek, Robert Lewandowski, Daniela Ladner, Amir A. Borhani, Gorkem Durak, Ulas Bagci

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2025Journal of Nondestructive Evaluation

A review of ultrasonic testing and evaluation methods with applications in civil NDT/e

Inad Alqurashi, Ninel Alver, Ulas Bagci and Fikret Necati Catbas

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2025IEEE ISBI 2025

Adaptive aggregation weights for federated segmentation of pancreas MRI

Hongyi Pan, Gorkem Durak, Zheyuan Zhang, Yavuz Taktak, Elif Keles, Halil Ertugrul Aktas, Alpay Medetalibeyoglu, Yury Velichko, Concetto Spampinato, Ivo Schoots, Marco J Bruno, Rajesh N Keswani, Pallavi Tiwari, Candice Bolan, Tamas Gonda, Michael G Goggins, Michael B Wallace, Ziyue Xu, Ulas Bagci

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2025Advances in Clinical Radiology - 2025

Advances in MRI in the evaluation of chronic pancreatitis and the less common forms of pancreatitis

Camila Lopes Vendrami, Nancy Hammond, Pardeep Mittal, Rajesh N. Keswani, Ulas Bagci, Frank H. Miller

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2025Medical Image Analysis

AdverIN: monotonic adversarial intensity attack for domain generalization in medical image segmentation

Zheyuan Zhang, Bin Wang, Lanhong Yao, Elif Keles, Debesh Jha, Matthew Antalek, Gorkem Durak, Alpay Medetalibeyoglu, Concetto Spampinato, Baris Turkbey, Boqing Gong, Ulas Bagci

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2025Radiology - 2025

Anatomy-derived 3D aortic hemodynamics using fluid physics–informed deep learning

Haben Berhane, Anthony Maroun, David Dushfunian, Justin Baraboo, Gabriela Martinez, Tyler Jacobson, Ulas Bagci, Bradley D. Allen, Michael Markl

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2025RSNA 2025

Automated 3D CT report generation using LLM with expert-informed assessment

Vanshali Sharma, Andrea Bejar, Wanying Dou, Gorkem Durak, Ulas Bagci

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2025Journal of the Pancreas - 2025

Bridging the gap in pancreatic imaging: a new era of AI-powered precision

Gorkem Durak and Ulas Bagci

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2025IEEE ISBI 2025

Conditional visuo-textual prompt learning for medical image analysis

Raffaele Mineo et al

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2025Abdominal Radiology - 2025

Current applications of radiomics in the assessment of tumor microenvironment of hepatocellular carcinoma

Junghwa Choi et al

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2025Tomography

Delta radiomics and tumor size: a new predictive radiomics model for chemotherapy response in liver metastases from breast and colorectal cancer

Nicolo Gennaro et al.

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2025ICCV 2025 - VisionDocs

Describe anything model for visual question answering on text-rich images

Yen-Linh Vu, Dinh-Thang Duong, Truong-Binh Duong, Anh-Khoi Nguyen, Thanh-Huy Nguyen, Le Thien Phuc Nguyen, Jianhua Xing, Xingjian Li, Tianyang Wang, Ulas Bagci, Min Xu

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2025IEEE Transactions on Medical Imaging